You can run an income report to see which invoices have been paid via BPAY.
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Click Reports > Finance.
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On the top right, click New Report.
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Configure the following:
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Report Type: Select Income.
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Payment Method: Select BPAY Auto. (Note: BPAY is for offline payments you have manually marked as paid via BPAY. BPAY Auto is for BPAY payments processed via Halaxy.)
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(Optional) Set any other filters as needed.
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Click Run.
The report lists invoices that have been paid via BPAY.
Updated